Strain Passport - Leuconostoc citreum

1. Taxonomy

Taxonomy
Domain Bacteria
Phylum Firmicutes
Class Bacilli
Order Lactobacillales
Family Lactobacillaceae
Genus Leuconostoc
Species Leuconostoc citreum

2. Assembly Statistics

Assembly Statistics
MAGID MAG21
Size (bp) 1455174
N.contigs 289
GC (%) 39.1
N50 (bp) 6289
Coding Density 80.5
N.CDSs 1348
Genome Completeness
Completeness 86.28
Contamination 1.92
Strain heterogeneity 33.33

3. Metabolism and Function (KEGG)

KEGG Function Annotation

Leuconostoc citreum KEGG Functional Classification

KEGG Resistome

name Type Level1 Level2 Description KO
ko01504 Gene sets beta-Lactam resistance modules beta-Lactam resistance, Bla system [MD:M00627] K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor K02171
ko01504 Gene sets Vancomycin resistance modules Vancomycin resistance, D-Ala-D-Lac type [MD:M00651] K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22] K08641
ko01504 Gene sets Vancomycin resistance modules Vancomycin resistance, D-Ala-D-Ser type [MD:M00652] K18350 vanSC, vanSE, vanSG; two-component system, OmpR family, sensor histidine kinase VanS [EC:2.7.13.3] K18350
ko01504 Gene sets CAMP resistance modules Cationic antimicrobial peptide (CAMP) resistance, dltABCD operon [MD:M00725] K03367 dltA; D-alanine–poly(phosphoribitol) ligase subunit 1 [EC:6.1.1.13] K03367
ko01504 Gene sets CAMP resistance modules Cationic antimicrobial peptide (CAMP) resistance, dltABCD operon [MD:M00725] K03739 dltB; membrane protein involved in D-alanine export K03739
ko01504 Gene sets CAMP resistance modules Cationic antimicrobial peptide (CAMP) resistance, dltABCD operon [MD:M00725] K14188 dltC; D-alanine–poly(phosphoribitol) ligase subunit 2 [EC:6.1.1.13] K14188
ko01504 Gene sets CAMP resistance modules Cationic antimicrobial peptide (CAMP) resistance, dltABCD operon [MD:M00725] K03740 dltD; D-alanine transfer protein K03740
ko01504 Gene sets CAMP resistance modules Cationic antimicrobial peptide (CAMP) resistance, lysyl-phosphatidylglycerol (L-PG) synthase MprF [MD:M00726] K14205 mprF, fmtC; phosphatidylglycerol lysyltransferase [EC:2.3.2.3] K14205
ko01504 Gene sets Multipdrug resistance modules Multidrug resistance, efflux pump AbcA [MD:M00700] K18104 abcA, bmrA; ATP-binding cassette, subfamily B, bacterial AbcA/BmrA [EC:7.6.2.2] K18104

KEGG Toxins

name Type Level1 Level2 Description KO
ko02042 Type II toxins: Membrane damaging toxins Pore-forming toxins, Other K03699 tlyC; magnesium and cobalt exporter, CNNM family tlyC; magnesium and cobalt exporter, CNNM family K03699
ko02042 Type II toxins: Membrane damaging toxins Pore-forming toxins, Other K11068 hlyIII; hemolysin III hlyIII; hemolysin III K11068

KEGG Bacterial Virulence

GeneID KO Description PFAM
MAG21_NHEDAO_02305 K13730 internalin A Leucine-rich repeat [PF14580.9]…

Carbon Metabolism

Nitrogen Metabolism

4. Expert systems

AMRFinderPlus Antimicrobial Resistance

## No AMRFinderPlus data

Virulence factors (VFDB)

## No VFDB data

5. BacDive

BacDive
Species Leuconostoc citreum
ncbi_taxid 33964
taxid_matching_level species
type_strain no
medium_name NA
medium_link NA
strain_history NA
gram NA
length NA
width NA
motility NA
oxygen_tolerance microaerophile
spore NA
aggregation_score NA
GC_content NA
antibiotic_resistance_chebi NA
antibiotic_resistance_metabolite NA

6. Publications

7. U.S. Patents

First 1 patents out of 1

patent_number patent_title
10123558 Leuconostoc citreum and fermented foods using the same as a starter, and compositions thereof