Strain Passport - Leuconostoc citreum
1. Taxonomy
|
Taxonomy
|
|
|---|---|
| Domain | Bacteria |
| Phylum | Firmicutes |
| Class | Bacilli |
| Order | Lactobacillales |
| Family | Lactobacillaceae |
| Genus | Leuconostoc |
| Species | Leuconostoc citreum |
2. Assembly Statistics
|
Assembly Statistics
|
|
|---|---|
| MAGID | MAG21 |
| Size (bp) | 1455174 |
| N.contigs | 289 |
| GC (%) | 39.1 |
| N50 (bp) | 6289 |
| Coding Density | 80.5 |
| N.CDSs | 1348 |
|
Genome Completeness
|
|
|---|---|
| Completeness | 86.28 |
| Contamination | 1.92 |
| Strain heterogeneity | 33.33 |
3. Metabolism and Function (KEGG)
KEGG Function Annotation
Leuconostoc citreum KEGG Functional Classification
KEGG Resistome
| name | Type | Level1 | Level2 | Description | KO |
|---|---|---|---|---|---|
| ko01504 | Gene sets | beta-Lactam resistance modules | beta-Lactam resistance, Bla system [MD:M00627] | K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor | K02171 |
| ko01504 | Gene sets | Vancomycin resistance modules | Vancomycin resistance, D-Ala-D-Lac type [MD:M00651] | K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22] | K08641 |
| ko01504 | Gene sets | Vancomycin resistance modules | Vancomycin resistance, D-Ala-D-Ser type [MD:M00652] | K18350 vanSC, vanSE, vanSG; two-component system, OmpR family, sensor histidine kinase VanS [EC:2.7.13.3] | K18350 |
| ko01504 | Gene sets | CAMP resistance modules | Cationic antimicrobial peptide (CAMP) resistance, dltABCD operon [MD:M00725] | K03367 dltA; D-alanine–poly(phosphoribitol) ligase subunit 1 [EC:6.1.1.13] | K03367 |
| ko01504 | Gene sets | CAMP resistance modules | Cationic antimicrobial peptide (CAMP) resistance, dltABCD operon [MD:M00725] | K03739 dltB; membrane protein involved in D-alanine export | K03739 |
| ko01504 | Gene sets | CAMP resistance modules | Cationic antimicrobial peptide (CAMP) resistance, dltABCD operon [MD:M00725] | K14188 dltC; D-alanine–poly(phosphoribitol) ligase subunit 2 [EC:6.1.1.13] | K14188 |
| ko01504 | Gene sets | CAMP resistance modules | Cationic antimicrobial peptide (CAMP) resistance, dltABCD operon [MD:M00725] | K03740 dltD; D-alanine transfer protein | K03740 |
| ko01504 | Gene sets | CAMP resistance modules | Cationic antimicrobial peptide (CAMP) resistance, lysyl-phosphatidylglycerol (L-PG) synthase MprF [MD:M00726] | K14205 mprF, fmtC; phosphatidylglycerol lysyltransferase [EC:2.3.2.3] | K14205 |
| ko01504 | Gene sets | Multipdrug resistance modules | Multidrug resistance, efflux pump AbcA [MD:M00700] | K18104 abcA, bmrA; ATP-binding cassette, subfamily B, bacterial AbcA/BmrA [EC:7.6.2.2] | K18104 |
KEGG Toxins
| name | Type | Level1 | Level2 | Description | KO |
|---|---|---|---|---|---|
| ko02042 | Type II toxins: Membrane damaging toxins | Pore-forming toxins, Other | K03699 tlyC; magnesium and cobalt exporter, CNNM family | tlyC; magnesium and cobalt exporter, CNNM family | K03699 |
| ko02042 | Type II toxins: Membrane damaging toxins | Pore-forming toxins, Other | K11068 hlyIII; hemolysin III | hlyIII; hemolysin III | K11068 |
KEGG Bacterial Virulence
| GeneID | KO | Description | PFAM |
|---|---|---|---|
| MAG21_NHEDAO_02305 | K13730 | internalin A | Leucine-rich repeat [PF14580.9]… |
Carbon Metabolism
Nitrogen Metabolism
4. Expert systems
AMRFinderPlus Antimicrobial Resistance
## No AMRFinderPlus data
Virulence factors (VFDB)
## No VFDB data
5. BacDive
|
BacDive
|
|
|---|---|
| Species | Leuconostoc citreum |
| ncbi_taxid | 33964 |
| taxid_matching_level | species |
| type_strain | no |
| medium_name | NA |
| medium_link | NA |
| strain_history | NA |
| gram | NA |
| length | NA |
| width | NA |
| motility | NA |
| oxygen_tolerance | microaerophile |
| spore | NA |
| aggregation_score | NA |
| GC_content | NA |
| antibiotic_resistance_chebi | NA |
| antibiotic_resistance_metabolite | NA |
6. Publications
7. U.S. Patents
First 1 patents out of 1
| patent_number | patent_title |
|---|---|
| 10123558 | Leuconostoc citreum and fermented foods using the same as a starter, and compositions thereof |